MmuEX0001811 @ mm9
Exon Skipping
Gene
ENSMUSG00000075302 | 4933404M02Rik
Description
RIKEN cDNA 4933404M02 gene [Source:MGI Symbol;Acc:MGI:1913998]
Coordinates
chr2:70360537-70361424:+
Coord C1 exon
chr2:70360537-70360564
Coord A exon
chr2:70361101-70361149
Coord C2 exon
chr2:70361388-70361424
Length
49 bp
Sequences
Splice sites
3' ss Seq
TATTCCTGCTTCTATTTTAGGCA
3' ss Score
10.3
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
Exon sequences
Seq C1 exon
CAACTACCTGGACAAGACTGATGTGCAG
Seq A exon
GCATCAAAAAGCAGACAGAATGGCAGATTGCTATTGTATGATCCGAAGG
Seq C2 exon
AAAAACTGATGAGCGGCGCCAATAAAGAAAAGTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075302_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.941 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGACAAGACTGATGTGC
R:
TGTGACTTTTCTTTATTGGCGCC
Band lengths:
60-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: