HsaEX6016673 @ hg19
Exon Skipping
Gene
ENSG00000204334 | AC007405.7
Description
Uncharacterized protein LOC285141 [Source:UniProtKB/Swiss-Prot;Acc:A1L162]
Coordinates
chr2:171633657-171634184:+
Coord C1 exon
chr2:171633657-171633687
Coord A exon
chr2:171633887-171633935
Coord C2 exon
chr2:171634154-171634184
Length
49 bp
Sequences
Splice sites
3' ss Seq
TATTTCTGCTTCTATTTTAGACA
3' ss Score
9.05
5' ss Seq
ACGGTAAAT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GACTTCTGTAGACAAGACAGATACTGTAAAG
Seq A exon
ACAGCAAAGAACAAACAGAATGGCAGATTGCTAATGTTTGATCCAAACG
Seq C2 exon
AAAAAGTGATGATTGAATCAAACGAAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204334-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=0.941 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTAGACAAGACAGATACTGTAAA
R:
TGCTTCGTTTGATTCAATCATCACT
Band lengths:
56-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)