RnoEX6017356 @ rn6
Exon Skipping
Gene
ENSRNOG00000056087 | Erich2
Description
glutamate-rich 2 [Source:RGD Symbol;Acc:1563852]
Coordinates
chr3:56815282-56816129:+
Coord C1 exon
chr3:56815282-56815312
Coord A exon
chr3:56815837-56815885
Coord C2 exon
chr3:56816093-56816129
Length
49 bp
Sequences
Splice sites
3' ss Seq
TATTCCTACTTCTGTTTTAGGCA
3' ss Score
10
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CAACTACCTAGACAAGACCGAAGTTGTAAAG
Seq A exon
GCACCCAAAAGCAGACAGAATGGCAGGTTGCTACTGTGTGATCCAAAGG
Seq C2 exon
AGAAACTGATGAGCGGCTCCAATAAAGAAAAGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056087-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.882 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTACCTAGACAAGACCGAAGT
R:
TGTGGCTTTTCTTTATTGGAGCC
Band lengths:
68-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]