MmuINT0037298 @ mm9
Intron Retention
Gene
ENSMUSG00000015093 | Clic3
Description
chloride intracellular channel 3 [Source:MGI Symbol;Acc:MGI:1916704]
Coordinates
chr2:25312363-25313290:+
Coord C1 exon
chr2:25312363-25312434
Coord A exon
chr2:25312435-25313180
Coord C2 exon
chr2:25313181-25313290
Length
746 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCTG
5' ss Score
2.04
3' ss Seq
CCTCTGTTCCACCCACCCAGGCC
3' ss Score
8.05
Exon sequences
Seq C1 exon
GGGCTGCTGCTGCCGCCGGATGCCTCGGCTCCCACCATGGCTGAAACCACCAAGCTCCAGCTCTTTGTGAAG
Seq A exon
GTTCTGGGCAGGCTGGGCTGGAAGAGGAGCTGGGCTTTTTTCTTCTTGTTGTTTGGGAGGAGGGGTGGGTCTTCCTAATGGTGCCCAAGTCCCTATCCCTGTGGTGGGTTTGAGTTGCCCCACACAGGGCTGAGGAGAGCCAGGCATCCTGGGTGAGGAGCTACCATAAGGAGGATCAGAGAGCCTGGGTCCCGCTCTTCACTTTGGCTCGTGGACCTGGCCCAGCTCTGGGAGAAAGCTTCTTAGTGAGGAGATAGATGTCAGTCTGGTAGCTGGCACCTGGCATTTAGTAGAGATTCAGGGTCATGTGCCAGACTGGGGGCTTGCCAGAGATGGCCCTTTTAGCTATCAGGCCAGTGCTCAGATCTGAGTGGGAGCAGGTCCTGGCCTCCTCTTTGGTCTCTTCCCTCCCTTCCCTGAGCTGTTAGCCTCAATACCCAGTTGTGTGGGTTAATCACTAGAGGATGAATCTCTGGCCTGCCCCACCCTGCAGCCAGTCTCTGTGACTGGAACCCTCTGGCAGGACCCCAAGCCTAGGCCTCTAAGCTCCCAACTTCTTTTGTCCTCCCCATTCCAGCGATCAGTTCAAGGGCCCTCACTAGACACTTGTAGATGCCATGCTCAACCAGGCCAGAGCCCTAGCCTGCCTCCAGAGCCAATGGCAGTGGGAGGCAGAGCTCCACCCAGCCAGGTGTCAGGATTCCTGGGTCTGCTCAGAGCCTGACACCTCTGTTCCACCCACCCAG
Seq C2 exon
GCCAGTGAGGATGGCGAGAGCGTAGGACACTGCCCTTCCTGTCAGCGGCTCTTCATGGTCCTACTCCTCAAGGGTGTGCCCTTCACACTCACCACAGTGGACACTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015093-Clic3:NM_027085:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134171=GST_N_3=PU(41.1=81.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: