GgaINT1009594 @ galGal4
Intron Retention
Gene
ENSGALG00000026027 | CLIC3
Description
chloride intracellular channel 3 [Source:HGNC Symbol;Acc:HGNC:2064]
Coordinates
chr17:417735-418106:-
Coord C1 exon
chr17:418026-418106
Coord A exon
chr17:417845-418025
Coord C2 exon
chr17:417735-417844
Length
181 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
AGCTCTGCCTTTGCCCGCAGGCG
3' ss Score
11.25
Exon sequences
Seq C1 exon
GGCACGGGCACTCGCTGCACAGTCACCGCTCAGCCGCCGCCCAGCATGGACGAGAAGCCCCAGATCCAGCTCTTCGTCAAG
Seq A exon
GTGAGGACCCGCCCGGGGCCGGGGGTGGCCGGGCCGGGGGTCGCGGCTGTCGCTGCCGGCGAGCGTCGAGGCCGCCAGCATTGCCGTCTGCGTCCGGCCGCTGCCCCGACCGCTGCCACTGCCACGGCCGCCGCGGGGAGCGCACCGGAGCGCGGCGGCTGAGCTCTGCCTTTGCCCGCAG
Seq C2 exon
GCGAGCGAGGACGGGGAGAGCGTGGGGCACTGCCCCTTCTGCCAGCGGCTCTTCATGGTGCTGCTGCTCAAAGGAGCTCCCTTCACCCTCACCACCGTGGACACGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026027:ENSGALT00000043084:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134171=GST_N_3=PU(41.1=81.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTCGCTGCACAGTCAC
R:
GGTGGTGAGGGTGAAGGGAG
Band lengths:
170-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]