RnoINT0037280 @ rn6
Intron Retention
Gene
ENSRNOG00000015184 | Clic3
Description
chloride intracellular channel 3 [Source:RGD Symbol;Acc:1307249]
Coordinates
chr3:2676296-2677249:+
Coord C1 exon
chr3:2676296-2676380
Coord A exon
chr3:2676381-2677139
Coord C2 exon
chr3:2677140-2677249
Length
759 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCTG
5' ss Score
2.04
3' ss Seq
CCTCTCTTCCACCCACCCAGGCC
3' ss Score
7.74
Exon sequences
Seq C1 exon
AAGGCACACCCTGTGCCCTGCGCTGCCGCCAGATGCCTCAGCTCCCACCATGGCTGAAACCACCAAGCTCCAGCTCTTTGTGAAG
Seq A exon
GTTCTGGGCATGCTGGGTTAGAGGGGTGCTGGGTTGGTTTTTGCTGTTGTTCAGGTGGGGGGGTGGGTCTTCCTAATGGTGCCTACGTCTTATCCCTGTGGTGGGTTTGAGCTGCCCCACACAGGGCTGAGCAGAGCCAGGCATCCTGGGGGAGGGCTGCCATAAGGAGGATCAGATAGCCCAGGCATCCTGGGGGAGGGGCTGCCATAAGGAGGATCAGATAGCCCAGGTCCTGCTCTTCCTTCACCTTGGCTCACGGACCTGGCTCAGCTCTGGGAGAAAGCTCCTCAGTGAGGAGGTGTCAATCAGTAGCTGGCACCAGCCATTTAGCTAGAGATTCAGGATCAGGCTGGGCACTTGCCAGAGATAGCCTTATTAGCTATCAGGCCTGTGCTCAGATCTGAGTGGGAGCAGGACCTGGCCTCCTCCTCGGTCCCTTCCCTCTCCGTCCCTGAGCTGTTAACCTCAATGCCCAGTTGTGTGGGTTAATCACTGGAAGATGGTTCTCTGGCCTGCCCCACCCTGCAGCCAGTCTCTGTGACTAGAACCCTTTGGCTCTGGAAGAAAAACTTTTGTGCTCCCCATTCCAGGGATCAGTTCAAGGGCCCTCACTAGACACTTGTAGACGCCATGCCCAGCCAAGCCAGAGCCCTAGCCTGCCTCCAGAGCCAATGGCAGTGGGAGGCAGAGTCCCACCCAGCCAGGTGGCAGGATTCCTGGGTCTGCTCAGAGCGGGACACCTCTCTTCCACCCACCCAG
Seq C2 exon
GCCAGTGAGGATGGCGAGAGCGTGGGACACTGCCCTTCCTGTCAGCGGCTCTTCATGGTCCTGCTCCTCAAGGGCGTGCCCTTCACACTCACCACAGTGGACACACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015184:ENSRNOT00000020497:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134171=GST_N_3=PU(41.1=81.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]