MmuINT0027152 @ mm9
Intron Retention
Gene
ENSMUSG00000015083 | C8g
Description
complement component 8, gamma polypeptide [Source:MGI Symbol;Acc:MGI:88237]
Coordinates
chr2:25354534-25355025:-
Coord C1 exon
chr2:25354918-25355025
Coord A exon
chr2:25354636-25354917
Coord C2 exon
chr2:25354534-25354635
Length
282 bp
Sequences
Splice sites
5' ss Seq
ACGGTGCGG
5' ss Score
7.99
3' ss Seq
GAACTCTGCCTACCCCACAGTCC
3' ss Score
6.19
Exon sequences
Seq C1 exon
TCTCACGGGCCCGTGGACCAGTGCATATGGTGGTTGCTGAGACTGACTATCAGAGCTTTGCCATCCTGTACCTGGAACAGGGAAGGAAGCTGTCTGTGAAACTATACG
Seq A exon
GTGCGGACTAGTCCTGTGATCATACATGGCCTGTGCTTTTCACACATGACCTGTGCTCTGCATCCTCCAGGTCCACCTTGATGGACAGGGCGTCCCCAGATGGACACACACCCCTTCTCATTCCTTTTCTATCCCCATACTCTTGGCAGTAGGCACCCTTGATGAACAGCTACACATGGGATGGGGTGGGAACTGGATGGGGCAGGGACACACAGCTGACCTGGCTGTGTGTCCTGGGTTCCCTGCCATGTTGAAAGCACTGGAACTCTGCCTACCCCACAG
Seq C2 exon
TCCGCTCACTGCCAGTGAATGACTCTGTCCTGGATGTGTTTGAGCGGCGAGTCAGGGAAGCCAACCTGACAGAAGATCAGATTCTTTTCTTTCCCAAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015083-C8g:NM_027062:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(25.9=100)
A:
NA
C2:
PF0006118=Lipocalin=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGACCAGTGCATATGGTG
R:
ACTTGGGAAAGAAAAGAATCTGATCT
Band lengths:
196-478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: