GgaINT1007997 @ galGal4
Intron Retention
Gene
ENSGALG00000024004 | C8G
Description
complement component 8, gamma polypeptide [Source:HGNC Symbol;Acc:HGNC:1354]
Coordinates
chr17:513928-514248:-
Coord C1 exon
chr17:514141-514248
Coord A exon
chr17:514030-514140
Coord C2 exon
chr17:513928-514029
Length
111 bp
Sequences
Splice sites
5' ss Seq
ACGGTGGGT
5' ss Score
8.27
3' ss Seq
ATGGTGGCCTTCCCCCATAGGCC
3' ss Score
9.92
Exon sequences
Seq C1 exon
GCCGTGGCTACAACAGCAAGATGGAGGTGGTGGTGGGAGAGGCGGACCCCCGCAGCTATGCCATCATCTACTACCAGGACAGCCAAGGCCTCTCTGTCAAGCTCTACG
Seq A exon
GTGGGTTGGCATGGGGCAGTGGATGCCTGTGCCCCACACCGTGCCCCACACCGTGCCCACTGCAGGGAGGGGGGCCGGCAGTGGGGCTGTGATGGTGGCCTTCCCCCATAG
Seq C2 exon
GCCGCAGCAGCCAGCTCAGCAATGCCATAGTGGACAAGTTTGAGCAGCGTGCCAGGGCTGTGGGCCTGAGTGAGGATGTGACCCACTACTTCCCCACATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024004:ENSGALT00000040479:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(26.1=100)
A:
NA
C2:
PF0006118=Lipocalin=PD(23.2=91.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAACAGCAAGATGGAGGTGG
R:
CATATGTGGGGAAGTAGTGGGT
Band lengths:
202-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]