RnoINT0027501 @ rn6
Intron Retention
Gene
ENSRNOG00000028701 | C8g
Description
complement C8 gamma chain [Source:RGD Symbol;Acc:1309074]
Coordinates
chr3:2724983-2725450:-
Coord C1 exon
chr3:2725343-2725450
Coord A exon
chr3:2725085-2725342
Coord C2 exon
chr3:2724983-2725084
Length
258 bp
Sequences
Splice sites
5' ss Seq
ACAGTGCGT
5' ss Score
5.66
3' ss Seq
CAACTCTGCCTATCCCACAGCCC
3' ss Score
7.34
Exon sequences
Seq C1 exon
CTCCACGGGCCCGTGGGCCAGTACATGTGGTTGTTGCTGAGACCGACTACCAGAGCTTTGCCATCCTGTATCTGGAGCAGGCGAGGAGGCTGTCTGTGAAACTATACA
Seq A exon
GTGCGTACTAGTCCTGCCGTCACACACGGCCTTATGCTTTTCACACTTCACCTGTGCTTTGCATCCTGGAATCCATCTTGATGGACCGGGTGACCCCAGATGGGCACACAGACCCTGTTCCTTTTCTATCCCCATAGTCTCAGTAGCAGGCACCCTAGAGGAATGGCTACACAGGGGCTGGTGTGGGGAGTAGCTGACCTGGCTGTGTCCTGGGCACCCTGCCCTGTCGAAACCACGGCAACTCTGCCTATCCCACAG
Seq C2 exon
CCCGCACACTGCCTGTGAGTGATTCTGCCCTGAATGCGTTTGAGGAGCGAGTCAGGGGAGCCAACCTGACAGAAGACCAGATCTTTTTCTTTCCCAAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028701:ENSRNOT00000061904:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(25.9=100)
A:
NA
C2:
PF0006118=Lipocalin=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCCAGTACATGTGGTTG
R:
TACTTGGGAAAGAAAAAGATCTGGT
Band lengths:
196-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]