RnoEX0015770 @ rn6
Exon Skipping
Gene
ENSRNOG00000028701 | C8g
Description
complement C8 gamma chain [Source:RGD Symbol;Acc:1309074]
Coordinates
chr3:2724983-2725604:-
Coord C1 exon
chr3:2725534-2725604
Coord A exon
chr3:2725343-2725450
Coord C2 exon
chr3:2724983-2725084
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTACCGTGGTTCTGCCTTAGCTC
3' ss Score
5.76
5' ss Seq
ACAGTGCGT
5' ss Score
5.66
Exon sequences
Seq C1 exon
AGACGGGATCTGCTGGCAGGTGCGCCAACTCTATGGAATCACAGGGGTCCCTGGCCGCTTCTTGCTCCAAG
Seq A exon
CTCCACGGGCCCGTGGGCCAGTACATGTGGTTGTTGCTGAGACCGACTACCAGAGCTTTGCCATCCTGTATCTGGAGCAGGCGAGGAGGCTGTCTGTGAAACTATACA
Seq C2 exon
CCCGCACACTGCCTGTGAGTGATTCTGCCCTGAATGCGTTTGAGGAGCGAGTCAGGGGAGCCAACCTGACAGAAGACCAGATCTTTTTCTTTCCCAAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028701_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(17.3=100)
A:
PF0006118=Lipocalin=FE(25.9=100)
C2:
PF0006118=Lipocalin=FE(24.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGGGATCTGCTGGCAG
R:
ACTTGGGAAAGAAAAAGATCTGGTCT
Band lengths:
170-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]