HsaEX6064130 @ hg38
Exon Skipping
Gene
ENSG00000176919 | C8G
Description
complement C8 gamma chain [Source:HGNC Symbol;Acc:HGNC:1354]
Coordinates
chr9:136945929-136946566:+
Coord C1 exon
chr9:136945929-136945999
Coord A exon
chr9:136946085-136946192
Coord C2 exon
chr9:136946465-136946566
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTACTGTGGCTCTGCCCCAGCCC
3' ss Score
5.12
5' ss Seq
ACGGTATGT
5' ss Score
9.94
Exon sequences
Seq C1 exon
GGATGGGATCTGCTGGCAGGTGCGCCAGCTCTATGGAGACACAGGGGTCCTCGGCCGCTTCCTGCTTCAAG
Seq A exon
CCCGAGACGCCCGAGGGGCTGTGCACGTGGTTGTCGCTGAGACCGACTACCAGAGTTTCGCTGTCCTGTACCTGGAGCGGGCGGGGCAGCTGTCAGTGAAGCTCTACG
Seq C2 exon
CCCGCTCGCTCCCTGTGAGCGACTCGGTCCTGAGTGGGTTTGAGCAGCGGGTCCAGGAGGCCCACCTGACTGAGGACCAGATCTTCTACTTCCCCAAGTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176919-'2-10,'2-4,3-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(17.3=100)
A:
PF0006118=Lipocalin=FE(25.9=100)
C2:
PF0006118=Lipocalin=FE(24.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGGATCTGCTGGCAGG
R:
ACTTGGGGAAGTAGAAGATCTGGT
Band lengths:
170-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains