HsaEX6064130 @ hg19
Exon Skipping
Gene
ENSG00000176919 | C8G
Description
complement component 8, gamma polypeptide [Source:HGNC Symbol;Acc:1354]
Coordinates
chr9:139840381-139840813:+
Coord C1 exon
chr9:139840381-139840451
Coord A exon
chr9:139840537-139840644
Coord C2 exon
chr9:139840776-139840813
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTACTGTGGCTCTGCCCCAGCCC
3' ss Score
5.12
5' ss Seq
ACGGTATGT
5' ss Score
9.94
Exon sequences
Seq C1 exon
GGATGGGATCTGCTGGCAGGTGCGCCAGCTCTATGGAGACACAGGGGTCCTCGGCCGCTTCCTGCTTCAAG
Seq A exon
CCCGAGACGCCCGAGGGGCTGTGCACGTGGTTGTCGCTGAGACCGACTACCAGAGTTTCGCTGTCCTGTACCTGGAGCGGGCGGGGCAGCTGTCAGTGAAGCTCTACG
Seq C2 exon
GGGCCCAGGGAGTAGTGACAGACAGGCCTGGTGTGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176919-'2-4,'2-2,3-4=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(17.3=100)
A:
PF0006118=Lipocalin=FE(25.9=100)
C2:
PF0006118=Lipocalin=PD(5.4=46.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGATCTGCTGGCAGGT
R:
CCACACCAGGCCTGTCTGTC
Band lengths:
106-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)