DreEX6094478 @ danRer10
Exon Skipping
Gene
ENSDARG00000032098 | c8g
Description
complement component 8, gamma polypeptide [Source:ZFIN;Acc:ZDB-GENE-040426-1898]
Coordinates
chr24:16888092-16889446:-
Coord C1 exon
chr24:16889376-16889446
Coord A exon
chr24:16888382-16888489
Coord C2 exon
chr24:16888092-16888193
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTCATTCTGTTCTTGTGCAGGCA
3' ss Score
10.02
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CAATTTCGTGTGCTGGGAGATCAAGCAGAACTACATGAAAACGAAAACCCCTGGGCAGCTCTTCCTCAAAG
Seq A exon
GCAAGAGACCGTCTGACAATGTGGACATAATGGTGCTCGAGACGGACTACAGCACATATGCTATGCTGGTTTTTAAGAGAGCAGAGAAAATTACTATGAAACTGTATG
Seq C2 exon
GTCGGTCTGGGGAAGTACCTGATAATATAGTGGATAAATTTGAGGATCGAGCGAAGACATTCAATTTGGGATTGGACGTAGTTTTCCAGTTTCCTGACTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032098-'4-4,'4-2,7-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(17.4=100)
A:
PF0006118=Lipocalin=FE(26.1=100)
C2:
PF0006118=Lipocalin=PD(23.9=94.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGTGTGCTGGGAGATCAAG
R:
AGGAAACTGGAAAACTACGTCCA
Band lengths:
162-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]