MmuEX6099556 @ mm10
Exon Skipping
Gene
ENSMUSG00000015083 | C8g
Description
complement component 8, gamma polypeptide [Source:MGI Symbol;Acc:MGI:88237]
Coordinates
chr2:25499014-25499659:-
Coord C1 exon
chr2:25499589-25499659
Coord A exon
chr2:25499398-25499505
Coord C2 exon
chr2:25499014-25499115
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTGTTGTGGTTCTGCCGCAGTCT
3' ss Score
7.24
5' ss Seq
ACGGTGCGG
5' ss Score
7.99
Exon sequences
Seq C1 exon
AGATGGGATATGTTGGCAGGTACGCCAACTCTTTGAGAACACAGGGGTCCCTGGCCGCTTCTTGTTCCAAG
Seq A exon
TCTCACGGGCCCGTGGACCAGTGCATATGGTGGTTGCTGAGACTGACTATCAGAGCTTTGCCATCCTGTACCTGGAACAGGGAAGGAAGCTGTCTGTGAAACTATACG
Seq C2 exon
TCCGCTCACTGCCAGTGAATGACTCTGTCCTGGATGTGTTTGAGCGGCGAGTCAGGGAAGCCAACCTGACAGAAGATCAGATTCTTTTCTTTCCCAAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015083_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(17.3=100)
A:
PF0006118=Lipocalin=FE(25.9=100)
C2:
PF0006118=Lipocalin=FE(24.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGGATATGTTGGCAGGT
R:
ACTTGGGAAAGAAAAGAATCTGATCT
Band lengths:
170-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types