GgaEX0026939 @ galGal3
Exon Skipping
Gene
ENSGALG00000024004 | C8G
Description
NA
Coordinates
chr17:894826-895541:-
Coord C1 exon
chr17:895455-895541
Coord A exon
chr17:895039-895146
Coord C2 exon
chr17:894826-894927
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGCCTCAATGTCCGCCATAGGCC
3' ss Score
7.01
5' ss Seq
ACGGTGGGT
5' ss Score
8.27
Exon sequences
Seq C1 exon
GGATGGGCAGTGCTGGGAGATCAGGCAGCGCTACGTCCCTGAAGGAGCCCACAGGCGCTTCTCCGTGAGAGGTGAGCACAGGGCTGG
Seq A exon
GCCGTGGTTACAACAGCAAGATGGAGGTGGTGGTGGGAGAGGCGGACCCCCGCAGCTATGCCATCATCTACTACCAGGACAGCCAAGGCCTCTCTGTCAAGCTCTACG
Seq C2 exon
GCCGCAGCAGCCAGCTCAGCAATGCCATAGTGGACAAGTTTGAGCAGCGTGCCAGGGCTGTGGGCCTGAGTGAGGATGTGACCCACTACTTCCCCACATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024004_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(21.0=100)
A:
PF0006118=Lipocalin=FE(22.5=100)
C2:
PF0006118=Lipocalin=PD(23.2=91.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGCAGTGCTGGGAGATC
R:
TATGTGGGGAAGTAGTGGGTCA
Band lengths:
186-294
Functional annotations
There are 0 annotated functions for this event