GgaEX0026939 @ galGal4
Exon Skipping
Gene
ENSGALG00000024004 | C8G
Description
complement component 8, gamma polypeptide [Source:HGNC Symbol;Acc:HGNC:1354]
Coordinates
chr17:513928-514581:-
Coord C1 exon
chr17:514511-514581
Coord A exon
chr17:514141-514248
Coord C2 exon
chr17:513928-514029
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGCCCCAATGTCCGCCATAGGCC
3' ss Score
7.11
5' ss Seq
ACGGTGGGT
5' ss Score
8.27
Exon sequences
Seq C1 exon
GGATGGGCAGTGCTGGGAGATCAGGCAGCGCTACGTCCCTGAAGGAGCCCACAGGCGCTTCTCCGTGAGAG
Seq A exon
GCCGTGGCTACAACAGCAAGATGGAGGTGGTGGTGGGAGAGGCGGACCCCCGCAGCTATGCCATCATCTACTACCAGGACAGCCAAGGCCTCTCTGTCAAGCTCTACG
Seq C2 exon
GCCGCAGCAGCCAGCTCAGCAATGCCATAGTGGACAAGTTTGAGCAGCGTGCCAGGGCTGTGGGCCTGAGTGAGGATGTGACCCACTACTTCCCCACATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024004_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(17.4=100)
A:
PF0006118=Lipocalin=FE(26.1=100)
C2:
PF0006118=Lipocalin=PD(23.2=91.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGCAGTGCTGGGAGATC
R:
TATGTGGGGAAGTAGTGGGTCA
Band lengths:
170-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]