HsaALTA0001364-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000176919 | C8G
Description
complement component 8, gamma polypeptide [Source:HGNC Symbol;Acc:1354]
Coordinates
chr9:139840537-139841018:+
Coord C1 exon
chr9:139840537-139840644
Coord A exon
chr9:139840889-139840916
Coord C2 exon
chr9:139840917-139841018
Length
28 bp
Sequences
Splice sites
5' ss Seq
ACGGTATGT
5' ss Score
9.94
3' ss Seq
TCCACGCCGCCTGGTGCCAGGAC
3' ss Score
4.27
Exon sequences
Seq C1 exon
CCCGAGACGCCCGAGGGGCTGTGCACGTGGTTGTCGCTGAGACCGACTACCAGAGTTTCGCTGTCCTGTACCTGGAGCGGGCGGGGCAGCTGTCAGTGAAGCTCTACG
Seq A exon
GACCCCAGGAACCCTGTCTGCCCTGCAG
Seq C2 exon
CCCGCTCGCTCCCTGTGAGCGACTCGGTCCTGAGTGGGTTTGAGCAGCGGGTCCAGGAGGCCCACCTGACTGAGGACCAGATCTTCTACTTCCCCAAGTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176919-3-7,3-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(25.9=100)
A:
NA
C2:
PF0006118=Lipocalin=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGACCGACTACCAGAGT
R:
CTGCTCAAACCCACTCAGGAC
Band lengths:
120-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)