HsaINT0025098 @ hg38
Intron Retention
Gene
ENSG00000176919 | C8G
Description
complement C8 gamma chain [Source:HGNC Symbol;Acc:HGNC:1354]
Coordinates
chr9:136946139-136946566:+
Coord C1 exon
chr9:136946139-136946192
Coord A exon
chr9:136946193-136946436
Coord C2 exon
chr9:136946437-136946566
Length
244 bp
Sequences
Splice sites
5' ss Seq
ACGGTATGT
5' ss Score
9.94
3' ss Seq
TCCACGCCGCCTGGTGCCAGGAC
3' ss Score
4.27
Exon sequences
Seq C1 exon
GTTTCGCTGTCCTGTACCTGGAGCGGGCGGGGCAGCTGTCAGTGAAGCTCTACG
Seq A exon
GTATGTGGGGGCCAGCCTCTGTGACCAGGCAGGCGCTCAAGCTCTGCACACTCACTGGGCCACCCCGAGGGGCTGGGTGAGCCCATGGGGACACACTTCCTTTCTCCCATCCTGATCCTCCTGCTAAGCAGGGGCCCAGGGAGTAGTGACAGACAGGCCTGGTGTGGGAGCAGGGAGAGGGCCCCGAGGGGGCAGGGGACACACAGACCCCGTTTCCAGAGCCCTCCACGCCGCCTGGTGCCAG
Seq C2 exon
GACCCCAGGAACCCTGTCTGCCCTGCAGCCCGCTCGCTCCCTGTGAGCGACTCGGTCCTGAGTGGGTTTGAGCAGCGGGTCCAGGAGGCCCACCTGACTGAGGACCAGATCTTCTACTTCCCCAAGTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176919:ENST00000484376:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(25.9=100)
A:
NA
C2:
PF0006118=Lipocalin=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCGCTGTCCTGTACCTGG
R:
ACTTGGGGAAGTAGAAGATCTGGT
Band lengths:
181-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development