GgaINT0124414 @ galGal3
Intron Retention
Gene
ENSGALG00000024004 | C8G
Description
NA
Coordinates
chr17:894826-895130:-
Coord C1 exon
chr17:895039-895130
Coord A exon
chr17:894928-895038
Coord C2 exon
chr17:894826-894927
Length
111 bp
Sequences
Splice sites
5' ss Seq
ACGGTGGGT
5' ss Score
8.27
3' ss Seq
ATGGTGGCCTTCCCCCATAGGCC
3' ss Score
9.92
Exon sequences
Seq C1 exon
CAAGATGGAGGTGGTGGTGGGAGAGGCGGACCCCCGCAGCTATGCCATCATCTACTACCAGGACAGCCAAGGCCTCTCTGTCAAGCTCTACG
Seq A exon
GTGGGTTGGCATGGGGCAGTGGATGCCTGTGCCCCACACCGTGCCCCACACCGTGCCCACTGCAGGGAGGGGGGCCGGCAGTGGGGCTGTGATGGTGGCCTTCCCCCATAG
Seq C2 exon
GCCGCAGCAGCCAGCTCAGCAATGCCATAGTGGACAAGTTTGAGCAGCGTGCCAGGGCTGTGGGCCTGAGTGAGGATGTGACCCACTACTTCCCCACATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024004:ENSGALT00000040477:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(22.5=100)
A:
NA
C2:
PF0006118=Lipocalin=PD(23.2=91.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGATGGAGGTGGTGGTGG
R:
CATATGTGGGGAAGTAGTGGGT
Band lengths:
194-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]