MmuEX0012046 @ mm9
Exon Skipping
Gene
ENSMUSG00000034903 | Cobll1
Description
Cobl-like 1 [Source:MGI Symbol;Acc:MGI:2442894]
Coordinates
chr2:64926396-64933921:-
Coord C1 exon
chr2:64933745-64933921
Coord A exon
chr2:64928679-64928797
Coord C2 exon
chr2:64926396-64927614
Length
119 bp
Sequences
Splice sites
3' ss Seq
ATCTATTCATGACCTTTCAGGCT
3' ss Score
6.93
5' ss Seq
GAGGTATAG
5' ss Score
7.13
Exon sequences
Seq C1 exon
CAAAATAATCCTGTACAGAATGAGCACAGTTCTCAAGTGCTGACTCCAGCTGATGGCCCATCGTTCACCCTTAAGAGACAGAGTTCTCTAACATTCCAGAGCTCTGACCCAGAGCACGTACGACAGAGCTTGCTCACTGCAATCCGGTCTGGAGAGGCTGCTGCCAAGTTGAAGAGA
Seq A exon
GCTGATTCATTCTCTTGCTGGGGTGAAAAGAATAGTGAAACCATGGATGTGCAAAAGCTCCATGAAGTATATCTCTGAAGTAGGATATGGAGGGAGTCTTTTGGTAATATGTCCAGGAG
Seq C2 exon
GTTACTGTTCCATCGAATACAATATCTGTGAATGGGAAGTCGGGCCTCAGCCAGTCCATGTCCATTGACGCCCAGGACAGTCGCTAATATTACCCTGCTGTGACACACTTCACCGACCAGCTTTCTGCCTACAAGAAATATTCACAAATATATATTTAGATGTACATTAATATATAAATCTATTCAGGAGTAAACATTTGTATTATGGATTTAATGCCAAAAGAAAAATGAATAGAATCTATAATTTATAATAAGTTTTGGCCTTTTTGTTATAGCTAAATACTGCTGCTTTAGAAATGTTAAACAAGGTGTAAATGACTTGTTTTTTTCCAATGAAGAACAATCACTGCTTATGGTTTTTTTTTTTCCTTATGGATATACTGTGCACCATGAAACAAAGGTGTAAATTGAGATTTATAGACATACTGTATGACACAGAAACAGGCAAGCACAGACTAACATTTACTGCCTCAGCGTTAGGCTATAATTAGAAAGATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034903-'30-29,'30-28,31-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.947 A=0.480 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCATCGTTCACCCTTAAG
R:
AAAGCTGGTCGGTGAAGTGTG
Band lengths:
247-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: