MmuEX0012046 @ mm10
Exon Skipping
Gene
ENSMUSG00000034903 | Cobll1
Description
Cobl-like 1 [Source:MGI Symbol;Acc:MGI:2442894]
Coordinates
chr2:65088350-65095864:-
Coord C1 exon
chr2:65095688-65095864
Coord A exon
chr2:65090622-65090740
Coord C2 exon
chr2:65088350-65089557
Length
119 bp
Sequences
Splice sites
3' ss Seq
ATCTATTCATGACCTTTCAGGCT
3' ss Score
6.93
5' ss Seq
GAGGTATAG
5' ss Score
7.13
Exon sequences
Seq C1 exon
CAAAATAATCCTGTACAGAATGAGCACAGTTCTCAAGTGCTGACTCCAGCTGATGGCCCATCGTTCACCCTTAAGAGACAGAGTTCTCTAACATTCCAGAGCTCTGACCCAGAGCACGTACGACAGAGCTTGCTCACTGCAATCCGGTCTGGAGAGGCTGCTGCCAAGTTGAAGAGA
Seq A exon
GCTGATTCATTCTCTTGCTGGGGTGAAAAGAATAGTGAAACCATGGATGTGCAAAAGCTCCATGAAGTATATCTCTGAAGTAGGATATGGAGGGAGTCTTTTGGTAATATGTCCAGGAG
Seq C2 exon
GTTACTGTTCCATCGAATACAATATCTGTGAATGGGAAGTCGGGCCTCAGCCAGTCCATGTCCATTGACGCCCAGGACAGTCGCTAATATTACCCTGCTGTGACACACTTCACCGACCAGCTTTCTGCCTACAAGAAATATTCACAAATATATATTTAGATGTACATTAATATATAAATCTATTCAGGAGTAAACATTTGTATTATGGATTTAATGCCAAAAGAAAAATGAATAGAATCTATAATTTATAATAAGTTTTGGCCTTTTTGTTATAGCTAAATACTGCTGCTTTAGAAATGTTAAACAAGGTGTAAATGACTTGTTTTTTTCCAATGAAGAACAATCACTGCTTATGGTTTTTTTTTTTCCTTATGGATATACTGTGCACCATGAAACAAAGGTGTAAATTGAGATTTATAGACATACTGTATGACACAGAAACAGGCAAGCACAGACTAACATTTACTGCCTCAGCGTTAGGCTATAATTAGAAAGATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034903_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=0.480 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000112431fB1081
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCATCGTTCACCCTTAAG
R:
AAAGCTGGTCGGTGAAGTGTG
Band lengths:
247-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types