MmuEX0013294 @ mm9
Exon Skipping
Gene
ENSMUSG00000056436 | Cyct
Description
cytochrome c, testis [Source:MGI Symbol;Acc:MGI:88579]
Coordinates
chr2:76194137-76198507:-
Coord C1 exon
chr2:76198370-76198507
Coord A exon
chr2:76195630-76195658
Coord C2 exon
chr2:76194137-76194329
Length
29 bp
Sequences
Splice sites
3' ss Seq
CCTGTGTTCATTCTTCACAGAAT
3' ss Score
9.9
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GAGGATGGAGCCCGCCATCAGCTGGTGCTGGGTCCTGCCTTTAAGAGGAGTCCTTGGGCACAGCAGTTGCACCTTACATCTTGGCCTCCCTGCATCAGTGGACCAAGGGTGGCCCAGGGCACGGCTGCTGTGATTGTG
Seq A exon
AATACAAAGTATAAGGAAACAAAGTCCAG
Seq C2 exon
TTTAAGGTCTTATTGCAGAGCAAAATGGGAGATGCTGAAGCAGGCAAGAAGATCTTTGTTCAGAAATGTGCTCAGTGCCACACGGTGGAAAAAGGCGGGAAACACAAGACAGGTCCAAATCTCTGGGGCCTCTTTGGTCGAAAGACAGGACAAGCACCAGGATTTTCTTACACGGATGCAAACAAGAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056436-'1-2,'1-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.070
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0003416=Cytochrom_C=PU(53.0=93.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTTACATCTTGGCCTCC
R:
AGATCTTCTTGCCTGCTTCAGC
Band lengths:
125-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types