MmuEX0013294 @ mm10
Exon Skipping
Gene
ENSMUSG00000056436 | Cyct
Description
cytochrome c, testis [Source:MGI Symbol;Acc:MGI:88579]
Coordinates
chr2:76356080-76360450:-
Coord C1 exon
chr2:76360313-76360450
Coord A exon
chr2:76357573-76357601
Coord C2 exon
chr2:76356080-76356272
Length
29 bp
Sequences
Splice sites
3' ss Seq
CCTGTGTTCATTCTTCACAGAAT
3' ss Score
9.9
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GAGGATGGAGCCCGCCATCAGCTGGTGCTGGGTCCTGCCTTTAAGAGGAGTCCTTGGGCACAGCAGTTGCACCTTACATCTTGGCCTCCCTGCATCAGTGGACCAAGGGTGGCCCAGGGCACGGCTGCTGTGATTGTG
Seq A exon
AATACAAAGTATAAGGAAACAAAGTCCAG
Seq C2 exon
TTTAAGGTCTTATTGCAGAGCAAAATGGGAGATGCTGAAGCAGGCAAGAAGATCTTTGTTCAGAAATGTGCTCAGTGCCACACGGTGGAAAAAGGCGGGAAACACAAGACAGGTCCAAATCTCTGGGGCCTCTTTGGTCGAAAGACAGGACAAGCACCAGGATTTTCTTACACGGATGCAAACAAGAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056436-'1-2,'1-0,5-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.070
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0003416=Cytochrom_C=PU(53.0=93.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTTACATCTTGGCCTCC
R:
AGATCTTCTTGCCTGCTTCAGC
Band lengths:
125-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types