RnoEX0064211 @ rn6
Exon Skipping
Gene
ENSRNOG00000024457 | Pde11a
Description
phosphodiesterase 11A [Source:RGD Symbol;Acc:621793]
Coordinates
chr3:63207735-63211845:-
Coord C1 exon
chr3:63211703-63211845
Coord A exon
chr3:63209125-63209153
Coord C2 exon
chr3:63207735-63207960
Length
29 bp
Sequences
Splice sites
3' ss Seq
CCTGTGCTTATTCTTCACAGAAA
3' ss Score
8.4
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCAGCGAGGATGGAGCCCGCCATCAGCTGGTGCATGATCCGGCCTGTAAGCGGAGTCCTCGGGCACAGCAGTCGCGCCTTAAATCTTGGCCTCACTGCATCAGTGGACCAGGGGTGGCTCAGGGCAGCGCTGCTGTGATCGTG
Seq A exon
AAAACAAAGAATAGGGAAACCAAGTCCAG
Seq C2 exon
GTTTGCAAATCTGAGACTTTTTTTGGTTGGTGATTTAAGGTTTTATTGCCGAGCAAAATGGGAGATGCTGAAGCAGGCAAGAAGATTTTCATTCAGAAATGTGCGCAGTGCCACACAGTGGAGAAAGGTGGGAAGCACAAGACAGGGCCAAATCTCTGGGGCCTTTTTGGCCGAAAGACTGGACAAGCACCAGGATTTTCTTACACGGATGCAAACAAGAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024457_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.096
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0003416=Cytochrom_C=PU(53.0=93.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTGGCCTCACTGCATCAG
R:
CATCTCCCATTTTGCTCGGCA
Band lengths:
128-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]