BtaEX0010543 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039522 | CYCT
Description
Bos taurus cytochrome c, testis (CYCT), mRNA. [Source:RefSeq mRNA;Acc:NM_001077963]
Coordinates
chr2:18780936-18786575:+
Coord C1 exon
chr2:18780936-18781049
Coord A exon
chr2:18785281-18785325
Coord C2 exon
chr2:18786401-18786575
Length
45 bp
Sequences
Splice sites
3' ss Seq
CCCCACTTCCACTGCCCCAGCAC
3' ss Score
3.94
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAGGCGCTGCTGCGGTATCGCCAGCGTTGATCTCAGGACAGACTGTGGCTCACAGCTGCACGTTGACGCTAAAGGTTCTGCAAGGAGGCAGAGGACGGAGCCACTGGCCCTGAG
Seq A exon
CACCCATTCTTCAAAGAACACAAGCTGCAGGAAAACAAAACCAAG
Seq C2 exon
AACAAAATGGCAGATGCTGAGGCAGGCAAGAAGATCTTTATTCAAAAATGTGCTCAGTGCCACACAGTGGAGAAAGGCGGAAAACACAAGACTGGTCCAAATCTCTGGGGCCTTTTTGGCAGAAAAACAGGACAAGCGCCAGGATTTTCTTATACCGAGGCAAACAAAAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039522_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.053
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0003416=Cytochrom_C=PU(53.0=93.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACGTTGACGCTAAAGGTT
R:
TTTCCGCCTTTCTCCACTGTG
Band lengths:
141-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development