MmuALTA0004924-4/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000056436 | Cyct
Description
cytochrome c, testis [Source:MGI Symbol;Acc:MGI:88579]
Coordinates
chr2:76356080-76357601:-
Coord C1 exon
chr2:76357573-76357601
Coord A exon
chr2:76356255-76356305
Coord C2 exon
chr2:76356080-76356254
Length
51 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TTTTTTTTTTTTTTTCCTAGGTT
3' ss Score
11.76
Exon sequences
Seq C1 exon
AATACAAAGTATAAGGAAACAAAGTCCAG
Seq A exon
GTTTTCAAATCTGATATTTTCTTTGGTCTGTAGTTTAAGGTCTTATTGCAG
Seq C2 exon
AGCAAAATGGGAGATGCTGAAGCAGGCAAGAAGATCTTTGTTCAGAAATGTGCTCAGTGCCACACGGTGGAAAAAGGCGGGAAACACAAGACAGGTCCAAATCTCTGGGGCCTCTTTGGTCGAAAGACAGGACAAGCACCAGGATTTTCTTACACGGATGCAAACAAGAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056436-5-4,5-3,5-2,5-1-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.070
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0003416=Cytochrom_C=PU(53.0=93.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGTATAAGGAAACAAAGTCCAG
R:
ACCAAAGAGGCCCCAGAGATT
Band lengths:
146-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types