RnoALTA0028432-2/2 @ rn6

Alternative 3'ss

Gene

ENSRNOG00000024457 | Pde11a

Description

phosphodiesterase 11A [Source:RGD Symbol;Acc:621793]

Coordinates

chr3:63207885-63209153:-

Coord C1 exon

chr3:63209125-63209153

Coord A exon

chr3:63207922-63207960

Coord C2 exon

chr3:63207885-63207921

Length

39 bp

Sequences

Splice sites

5' ss Seq

CAGGTAGGC

5' ss Score

9.88

3' ss Seq

CTCTCCCATTTTTTTTCTAGGTT

3' ss Score

11.6

Exon sequences

Seq C1 exon

AAAACAAAGAATAGGGAAACCAAGTCCAG

Seq A exon

GTTTGCAAATCTGAGACTTTTTTTGGTTGGTGATTTAAG

Seq C2 exon

GTTTTATTGCCGAGCAAAATGGGAGATGCTGAAGCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000024457-1-4,1-3-2/2

Average complexity

Alt3

Mappability confidence:

NA

Protein Impact

5' UTR

No structure available

Features

Disorder rate (Iupred):

  C1=NA A=NA C2=0.096

Domain overlap (PFAM):

C1:

NA

A:

NA

C2:

PF0003416=Cytochrom_C=PU(53.0=93.0)

Main Inclusion Isoform:

ENSRNOP00000051289

Main Skipping Isoform:

NA

Other Inclusion Isoforms:

ENSRNOP00000008371

Other Skipping Isoforms:

NA

Associated events

Conservation

Human

(hg38)

chr2:178104534-178104535

Human

(hg19)

chr2:178969261-178969262

Mouse

(mm10)

chr2:76356080-76356305

ALTERNATIVE

MmuALTA0004924-4/4

(Cyct)

Mouse

(mm9)

No conservation detected

Cow

(bosTau6)

chr2:18786347-18786348

Chicken

(galGal4)

No conservation detected

Chicken

(galGal3)

No conservation detected

Zebrafish

(danRer10)

chr6:10676143-10676144

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

No suggested primer sequences

R:

No suggested primer sequences

Band lengths:

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]