MmuEX0032038 @ mm9
Exon Skipping
Gene
ENSMUSG00000026923 | Notch1
Description
Notch gene homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:97363]
Coordinates
chr2:26310384-26319525:-
Coord C1 exon
chr2:26319230-26319525
Coord A exon
chr2:26317668-26318009
Coord C2 exon
chr2:26310384-26310484
Length
342 bp
Sequences
Splice sites
3' ss Seq
AACCCATCCCTGCCTTCCAGATC
3' ss Score
9.2
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATGGCTTCACACCCCTCATGATTGCCTCCTGCAGTGGAGGGGGCCTTGAGACAGGCAACAGTGAAGAAGAAGAAGATGCACCTGCTGTCATCTCTGACTTCATCTACCAGGGCGCCAGCTTGCACAACCAGACAGACCGCACCGGGGAGACCGCCTTGCACTTGGCTGCCCGATACTCTCGTTCAGATGCTGCAAAGCGCTTGCTGGAGGCCAGTGCAGATGCCAACATCCAGGACAACATGGGCCGTACTCCGTTACATGCAGCAGTTTCTGCAGATGCTCAGGGTGTCTTCCAG
Seq A exon
ATCCTGCTCCGGAACAGGGCCACAGATCTGGATGCCCGAATGCATGATGGCACAACTCCACTGATCCTGGCTGCGCGCCTGGCCGTGGAGGGCATGCTGGAGGACCTCATCAACTCACATGCTGACGTCAATGCCGTGGATGACCTAGGTAGGCCCGAGCTACAGCCCAGCTACCGAGGACATCAGCCAGTGCCTGGTCTGCTCAGCCCCAACCCACTCTCTCCTCTCTTTGCTTCCTTTCCAGGCAAGTCGGCTTTGCATTGGGCGGCCGCGGTGAACAATGTGGATGCTGCTGTTGTGCTCCTGAAGAACGGAGCCAACAAGGACATGCAGAACAACAAG
Seq C2 exon
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCAAGCAAAATGGGAACTTTCAGAAATTTGTCCCATGGACACAACAAGTTCTCTTTTATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026923-'47-49,'47-46,50-49
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=0.096 C2=NA
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(83.5=76.8)
A:
PF127962=Ank_2=PU(31.1=84.8)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGAGACAGGCAACAGTG
R:
AGAACTTGTTGTGTCCATGGGA
Band lengths:
346-688
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: