BtaEX6047253 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022799 | NOTCH1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSM3]
Coordinates
chr11:103989563-103991259:-
Coord C1 exon
chr11:103990964-103991259
Coord A exon
chr11:103989782-103989929
Coord C2 exon
chr11:103989563-103989660
Length
148 bp
Sequences
Splice sites
3' ss Seq
AGACTTTCCCTGTGGTCCAGATC
3' ss Score
5.09
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ACGGCTTCACGCCCCTCATGATCGCCTCCTGCAGCGGAGGGGGCCTAGAGACTGGCAACAGCGAGGAGGAGGAGGACGCGCCCGCGGTCATCTCGGACTTCATCTACCAGGGCGCCAGCCTGCACAACCAGACGGACCGCACCGGCGAGACCGCCCTGCACCTGGCCGCCCGCTACTCGCGCTCCGACGCGGCCAAGCGCCTGCTGGAGGCCAGCGCGGACGCCAACATACAGGACAACATGGGGCGCACCCCGCTGCACGCGGCCGTGTCTGCCGACGCACAGGGCGTTTTCCAG
Seq A exon
ATCCTGATCCGGAACCGAGCCACCGACCTGGATGCCCGCATGCACGACGGCACGACCCCGCTGATCCTCGCTGCCCGCCTGGCCGTGGAGGGCATGCTGGAGGACCTCATCAACTCTCACGCCGACGTCAACGCTGTGGATGACCTGG
Seq C2 exon
GCAAGTCCGCCCTGCACTGGGCAGCCGCGGTGAACAACGTGGAGGCTGCTGTCGTGCTGCTGAAGAACGGGGCCAACAAGGACATGCAGAACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022799-'39-34,'39-33,40-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.434 A=0.000 C2=0.212
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(84.7=83.8)
A:
PF127962=Ank_2=PD(13.3=26.0),PF127962=Ank_2=PU(30.4=56.0)
C2:
PF127962=Ank_2=FE(34.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGACTTCATCTACCAGGGC
R:
CAGCCTCCACGTTGTTCACC
Band lengths:
252-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]