GgaEX0002989 @ galGal4
Exon Skipping
Gene
ENSGALG00000002375 | NOTCH1
Description
notch 1 [Source:HGNC Symbol;Acc:HGNC:7881]
Coordinates
chr17:7839626-7840511:+
Coord C1 exon
chr17:7839626-7839921
Coord A exon
chr17:7840174-7840321
Coord C2 exon
chr17:7840414-7840511
Length
148 bp
Sequences
Splice sites
3' ss Seq
GCTTCCTCTGGCTGGGGCAGATC
3' ss Score
5.95
5' ss Seq
TGGGTACAG
5' ss Score
0.89
Exon sequences
Seq C1 exon
ACGGCTTCACGCCCCTCATGATCGCCTCGTGCAGCGGAGGGGGGCTGGAGACTGGCAACAGCGAGGAGGAGGACGATGCCCCTGCAGTCATCTCAGATTTCATCTACCAAGGCGCCAGTTTGCACAACCAGACTGACCGCACCGGCGAGACCGCGCTGCACCTGGCTGCCCGCTACTCGCGCTCCGACGCTGCCAAACGCCTGCTGGAAGCCAGTGCTGATGCGAACATTCAGGATAACATGGGCAGGACCCCTCTGCACGCCGCTGTCTCTGCTGATGCCCAAGGAGTCTTCCAG
Seq A exon
ATCCTGATAAGGAACAGGGCGACTGATCTCGATGCCCGAATGCACGATGGGACGACCCCACTGATCCTGGCTGCTCGCTTGGCTGTGGAGGGGATGCTGGAGGACCTCATCAACTGCCACGCAGACGTCAACGCTGTGGATGATCTGG
Seq C2 exon
GCAAGTCAGCACTGCACTGGGCAGCTGCTGTGAACAATGTCGAAGCCGCTGTCGTCCTCCTGAAGAACGGTGCCAATAAGGATATGCAGAACAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002375_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=0.000 C2=0.212
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(83.5=76.8)
A:
PF127962=Ank_2=PD(14.3=26.0),PF127962=Ank_2=PU(31.2=58.0)
C2:
PF127962=Ank_2=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTACCAAGGCGCCAGTTTG
R:
GGCTTCGACATTGTTCACAGC
Band lengths:
242-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]