DreEX6014344 @ danRer10
Exon Skipping
Gene
ENSDARG00000052094 | notch1b
Description
notch 1b [Source:ZFIN;Acc:ZDB-GENE-990415-183]
Coordinates
chr5:65003444-65006874:-
Coord C1 exon
chr5:65006576-65006874
Coord A exon
chr5:65004868-65005015
Coord C2 exon
chr5:65003444-65003541
Length
148 bp
Sequences
Splice sites
3' ss Seq
AACCATTGTTTCTCATGCAGATT
3' ss Score
8.44
5' ss Seq
TTGGTATGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
ATGGCTTTACTCCTCTGATGATTGCGTCCTGCAGTGGAGGAGGGCTCGAAACGGGAAATAGCGAGGAAGAGGAAGACGCTTCAGCAAACGTCATCAATGATTTCATCTATCAGGGCGCCAACCTTCACAACCAGACAGACCGCACGGGTGAGACGGCTCTACACCTGGCTGCCCGCTACGCCCGCTCAGACGCCGCGAAACGACTGCTGGAGGCCAGTGCTGATGCTAACATCCAGGACAATATGGGCAGGACTCCATTACATGCCGCTGTGGCTGCTGATGCCCAAGGCGTCTTCCAG
Seq A exon
ATTTTGATACGGAACCGCGCCACAGATCTAGACGCCCGCATGCATGATGGCACCACACCTCTGATACTGGCCGCAAGACTGGCGGTCGAGGGCATGGTGGAGGAACTCATCAACTGCCATGCTGACGTTAATGCCATTGATGACTTTG
Seq C2 exon
GTAAATCTGCTCTTCACTGGGCAGCAGCTGTGAACAATGTAGATGCAGCGATGGTGTTGCTTAAGAATGGGGCAAATAAAGACATGCAGAACAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052094-'34-36,'34-35,35-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.000 C2=0.212
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(83.3=75.0)
A:
PF127962=Ank_2=PD(14.4=26.0),PF127962=Ank_2=PU(31.2=58.0)
C2:
PF127962=Ank_2=FE(34.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACCTTCACAACCAGACA
R:
TAAGCAACACCATCGCTGCAT
Band lengths:
246-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]