MmuALTD0010437-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000026991 | Pkp4
Description
plakophilin 4 [Source:MGI Symbol;Acc:MGI:109281]
Coordinates
chr2:59143193-59143549:+
Coord C1 exon
chr2:59143193-59143248
Coord A exon
chr2:59143249-59143254
Coord C2 exon
chr2:59143362-59143549
Length
6 bp
Sequences
Splice sites
5' ss Seq
AGGGTCTGT
5' ss Score
2.7
3' ss Seq
TCACTGCCTTATTCTTGCAGGAT
3' ss Score
10.39
Exon sequences
Seq C1 exon
GACAGAGCCAGAACAGGGGACCCTCTACTCACCAGAACAGACTTCTCTCCATGAAA
Seq A exon
GTGAGG
Seq C2 exon
GATCGTTGGGAAACTCAAGAAGTTCAACACAGATGAATTCTTACTCTGACAGTGGGTACCAGGAAGCAGGGAGTTTCCACAACAGCCAAACCGTGAACAAGGCAGACAGCAGACAGCATCCATTCACAGGATCAACAAGTAACCATGTGGTGAGGACTTCAAGAGCTGAAGGACAAACACTGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026991-15-17,16-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCCTCTACTCACCAGAA
R:
CCTGGTACCCACTGTCAGAGT
Band lengths:
103-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: