HsaALTD0004797-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000144283 | PKP4
Description
plakophilin 4 [Source:HGNC Symbol;Acc:HGNC:9026]
Coordinates
chr2:158621100-158621421:+
Coord C1 exon
chr2:158621100-158621115
Coord A exon
chr2:158621116-158621121
Coord C2 exon
chr2:158621231-158621421
Length
6 bp
Sequences
Splice sites
5' ss Seq
AGGGTCTGT
5' ss Score
2.7
3' ss Seq
TCTTGGTTTCATTCTTACAGGAT
3' ss Score
10.26
Exon sequences
Seq C1 exon
ACATCTCTCCATGAAA
Seq A exon
GTGAGG
Seq C2 exon
GATCATTGGGTAACTCAAGAAGTTCAACACAAATGAATTCTTATTCCGACAGTGGATACCAGGAAGCAGGGAGTTTCCACAACAGCCAGAACGTGAGCAAGGCAGACAACAGACAGCAGCATTCATTCATAGGATCAACTAACAACCATGTGGTGAGGAATTCAAGAGCTGAAGGACAAACACTGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144283-43-30,44-30,45-30-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains