MmuALTD0007214-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000026971 | Itgb6
Description
integrin beta 6 [Source:MGI Symbol;Acc:MGI:96615]
Coordinates
chr2:60511459-60511750:-
Coord C1 exon
chr2:60511727-60511750
Coord A exon
NA
Coord C2 exon
chr2:60511459-60511534
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
TTTTTAATCTGTCTGCACAGTGA
3' ss Score
7.9
Exon sequences
Seq C1 exon
AGCTTTTCTGCTTTGCCTGTCCAG
Seq A exon
NA
Seq C2 exon
TGAAAACTGAACCGAATGGGGATTGAGCTGGTCTGCCTGTTTCTGCTACTTCTAGGAAGGAATGATCACGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026971-9-12,10-12-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTCTGCTTTGCCTGTCC
R:
TGGACGTGATCATTCCTTCCT
Band lengths:
97-169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: