BtaALTD0011141-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000009080 | ITGB6
Description
Bos taurus integrin, beta 6 (ITGB6), mRNA. [Source:RefSeq mRNA;Acc:NM_174698]
Coordinates
chr2:36255435-36256637:+
Coord C1 exon
chr2:36255435-36256382
Coord A exon
NA
Coord C2 exon
chr2:36256562-36256637
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
TTTTTAATCTGTCTGCACAGCGA
3' ss Score
8.35
Exon sequences
Seq C1 exon
AAAAATATCTTTCATCCAATTTTAAAAACAATGGAACACAGTATTTTGCTTTCCCTAGCCTGCCTTCTATTATAAATTGTAAAATAGTGATTTTTATTTTTCAGAGTTCATCTCAATTCTCTGAAAGGACTTAACAATGGAACATAAAAATCTCAGGTATTTGCCTTTAGCTCATTTTTTAAACCCTCCTGATACATAACTGACATATTCATGCTTTTATTTATCACTTTTACTGTTTACATTAAGTTATAACTATTTTAGAAACAACTTTAGATCATATTTCAATTATTCTTTTGACATTTCACCAGTCATTATTTTACTAAAGGTATCAACTTCCTCTAGGATGCAGAGAGACTAATAGAACCTACACAAAAATTTCTGCTGAATGAATTTCCCCACCTTCTTGGTGATTGTACACCTGCCTTCCTTATAAGGAGAACAAGGAAGTAAATCATGTTGGAGTTGCTCTTGAACACAGCTTTTCTTCTTTACCTGTCCAG
Seq A exon
NA
Seq C2 exon
CGAGAACTGAAACGGATGGGGATTGAACTGCTTTGCCTGTTCTTTCTATGTCTAGGAAGGAATGATCACGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009080-3-1,4-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAATGAATTTCCCCACCT
R:
AGAAAGAACAGGCAAAGCAGT
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development