MmuALTA0012178-3/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000015094 | Npdc1
Description
neural proliferation, differentiation and control gene 1 [Source:MGI Symbol;Acc:MGI:1099802]
Coordinates
chr2:25259605-25261860:+
Coord C1 exon
chr2:25259605-25259642
Coord A exon
chr2:25260618-25260640
Coord C2 exon
chr2:25260641-25261860
Length
23 bp
Sequences
Splice sites
5' ss Seq
AAGGCATTC
5' ss Score
-0.95
3' ss Seq
CCAGCACTCGGGAGGCAGAGGCA
3' ss Score
-19.85
Exon sequences
Seq C1 exon
CAATGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAG
Seq A exon
GCAGGCGGATTTCTGAGTTCGAG
Seq C2 exon
GCCAGCCTGGTCTACAAAGTGAGTTCCGGGACAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAAACCAAAAACCATATATAAAAAAAAAAAAAAAATGAAAACCCCCCAAAACCAAAAACAAAGGAAACTAAGGCAAAGTCTATAGGAGGCTATGGTTAACACATCCCATGGGGCCCACAGCATTGCCTGCAGTGTGCAGTGGAAGGAACTGGCTGGCCAGAGACACAGGAAGTTGATGGTCCTGCTGGGTATTTCCTTGGCCCTGCTGGCTTCCCAAGACAGAGACCAAAGTTCCAGGCTGGGATTATTCCTTACCTTTGAAGCAACTGAAGGTGTATATCCCATAGGAGAAACTGAGGCATAAAGCTCACTGCTCTGTGTAGCTGCATCACGATAGGACTGTTTGGCAGGTATAAGAGAACATTGTGCTCTGGGCCCCAAAAATGTGACTCAGAACTATGACCTAGACTGGCATCCCCAATACCGATCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015094-7-14,7-13,7-12-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGCCTGCCTCTGCCTC
R:
TCGAGACAGGGTTTCTCTGTGT
Band lengths:
102-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: