MmuALTA0012178-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000015094 | Npdc1
Description
neural proliferation, differentiation and control 1 [Source:MGI Symbol;Acc:MGI:1099802]
Coordinates
chr2:25400564-25406340:+
Coord C1 exon
chr2:25400564-25400698
Coord A exon
chr2:25405092-25405101
Coord C2 exon
chr2:25405102-25406340
Length
10 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TTAATCCCAGCACTCGGGAGGCA
3' ss Score
-11.82
Exon sequences
Seq C1 exon
CTTCAGGCCCGAGTACCCGGACAGCAGACCCGCCTGCCTGACTACTGCGCTGTAGCCATGTTCATACATCAGCTATTGAGCCGCGGTTATCGCTTCGACGAGCGCTCTTTCCGTGGAGTGGTCTTCGAAAAGAAG
Seq A exon
GCAGAGGCAG
Seq C2 exon
GCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCGGGACAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAAACCAAAAACCATATATAAAAAAAAAAAAAAAATGAAAACCCCCCAAAACCAAAAACAAAGGAAACTAAGGCAAAGTCTATAGGAGGCTATGGTTAACACATCCCATGGGGCCCACAGCATTGCCTGCAGTGTGCAGTGGAAGGAACTGGCTGGCCAGAGACACAGGAAGTTGATGGTCCTGCTGGGTATTTCCTTGGCCCTGCTGGCTTCCCAAGACAGAGACCAAAGTTCCAGGCTGGGATTATTCCTTACCTTTGAAGCAACTGAAGGTGTATATCCCATAGGAGAAACTGAGGCATAAAGCTCACTGCTCTGTGTAGCTGCATCACGATAGGACTGTTTGGCAGGTATAAGAGAACATTGTGCTCTGGGCCCCAAAAATGTGACTCAGAACTATGACCTAGACTGGCATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015094-3-15,3-13,3-12-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCGTGGAGTGGTCTTCG
R:
TCTGTGTAGTCCTGGCTGTCC
Band lengths:
97-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types