MmuEX0050089 @ mm9
Exon Skipping
Gene
ENSMUSG00000036352 | Ubac1
Description
ubiquitin associated domain containing 1 [Source:MGI Symbol;Acc:MGI:1920995]
Coordinates
chr2:25863239-25864783:-
Coord C1 exon
chr2:25864681-25864783
Coord A exon
chr2:25864381-25864489
Coord C2 exon
chr2:25863239-25863473
Length
109 bp
Sequences
Splice sites
3' ss Seq
GGCCTTGTCTTTCTCCTCAGCTA
3' ss Score
8.7
5' ss Seq
CCAGTATGC
5' ss Score
2.6
Exon sequences
Seq C1 exon
TTCCAGACAGAACTCCGGAAGATCCTCGTGTCTCTCATTGAGGTGGCACAGAAGCTGTTAGCACTGAATCCCGATGCAGTTGAATTGTTTAAGAAGGCAAATG
Seq A exon
CTATGCTGGATGAAGATGAGGATGAGCGAGTGGATGAGACTGCCTTGCGGCAGCTCACAGAGATGGGCTTTCCTGAGAGCAGAGCCTCAAAGGCCCTTCGGCTGAACCA
Seq C2 exon
CATGTCAGTGCCTCAGGCCATGGAGTGGCTAATTGAACACTCAGAAGATCCAGCTATTGACACACCTCTTCCAGGCCATGCTGCTCAAGCAGGGGCCAGTGCTGCAGCCACTACCTCCTCCACCTCCTCTGAAGCTGCTGTGGGAACTAGTGTTGAAGATGAGGAGTCCCGGGATGAGCTCACAGAAATCTTCAAGAAGATACGCAGGAAAAAGGAATTTCGAGCAGATGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036352_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.716 C2=0.644
Domain overlap (PFAM):
C1:
NO
A:
PF0062726=UBA=PU(70.3=70.3)
C2:
PF0062726=UBA=PD(27.0=12.7),PF0062726=UBA=PU(8.1=3.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTCTCTCATTGAGGTGGC
R:
CATCCCGGGACTCCTCATCTT
Band lengths:
253-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: