GgaEX1061534 @ galGal4
Exon Skipping
Gene
ENSGALG00000001713 | UBAC1
Description
ubiquitin-associated domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001026645]
Coordinates
chr17:8163529-8165966:+
Coord C1 exon
chr17:8163529-8163631
Coord A exon
chr17:8164321-8164429
Coord C2 exon
chr17:8165735-8165966
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTGTGTATGTGTAGCCA
3' ss Score
5.95
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
TTCCAGACAGAGCTCCGGAAGATCTTAGTTTCCCTCATTGAAGTTGCACAGAAATTGCTAGCACTGAACCCAGATGCAGTTGAACTATTTAAGAAGGCAAACG
Seq A exon
CCATGCTGGATGAGGATGAGGAAGACAGAGTGGATGAGATAGCTCTGCGGCAACTTACAGAAATGGGGTTTCCAGAGAGCAGAGCTGTCAAAGCCCTTCGATTAAATCA
Seq C2 exon
TATGTCAGTGACACAGGCCATGGAGTGGTTGATAGAACATGCAGATGACCCTGCAGTGGATGCTCCACTGCCAGGTCAGACTCCATCCGAAGCTGCAGCTGAAGCTGGTGCATCCTCTGCTGAAGCAACTGCAGGTCCAAGTTCAGAAGCAGGTGGGGAAGAAGCCAAAGATGAGCTGACTGAAATATTTAAGAAGATACGAAGGAAAAGAGAGTTTCGCCCAGACCCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001713_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.432 C2=0.615
Domain overlap (PFAM):
C1:
NO
A:
PF0062726=UBA=PU(70.3=70.3)
C2:
PF0062726=UBA=PD(27.0=12.8),PF0062726=UBA=PU(8.1=3.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACAGAGCTCCGGAAGAT
R:
CTTGGACCTGCAGTTGCTTCA
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]