HsaEX6063962 @ hg38
Exon Skipping
Gene
ENSG00000130560 | UBAC1
Description
UBA domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30221]
Coordinates
chr9:135932969-135946371:-
Coord C1 exon
chr9:135946269-135946371
Coord A exon
chr9:135945757-135945997
Coord C2 exon
chr9:135932969-135933515
Length
241 bp
Sequences
Splice sites
3' ss Seq
GCCCTGTCGTCTCCCTGCAGCAA
3' ss Score
10.95
5' ss Seq
GAGGTACCT
5' ss Score
7.63
Exon sequences
Seq C1 exon
TTCCAGACAGAACTCCGGAAGATACTGGTGTCTCTCATCGAGGTGGCGCAGAAGCTGTTAGCGCTGAACCCAGATGCAGTGGAATTGTTTAAGAAGGCGAATG
Seq A exon
CAATGCTGGACGAGGACGAGGATGAGCGTGTGGACGAGGCTGCCCTGCGGCAGCTCACGGAGATGGGCTTTCCGGAGAACAGAGCCACCAAGGCCCTTCAGCTGAACCAGTGCGTGGGGGGCCACCTCCTTCCCTTGCCGGAGACACCTGGGGCCTGGTTTTGTGGGGCTCCCACCGTGGGTGACGTCCTCCTACCCTAAACTCTTTGACTGAATCATTTCTAACGTGGGGTTTTGAAGAG
Seq C2 exon
CATTTGAAGACATGCTGGAGAACCCACTGAACAGCACCCAGTGGATGAATGATCCAGAAACGGGGCCTGTCATGCTGCAGATCTCTAGAATCTTCCAGACACTAAATCGCACGTAGGTGGCGTTGTTCCACTCGGCTATCAGGCCACAGCAGCCCCCTGGTGCGGCCCGAGACCGGGCAGAGTGGACCTCACCTGGAAACTCACCTTCAGCGCCTCAGCCCTGGACTGTTAGAGGTGCTGCAGCTGCTCCTGCTCTCTGATCTTATTGCTTATAAACTTTGGTGACGGTAGTGTGTAAGGCCGTATTTTTAGCATCTGACAGGTGTTTACAAAAAAGTGGTTGTCGCACTGGGAAGTGGAGTGATGGCCTCGTCTCCAGTGCTCCTCTGGGCTCTTGAGTTGCTGCTTGAATTGCCGTGTAGACATTTGCTTGGAGAGTCCACTTGTTATTTGACGGAGGTAGGTTTCAACCCAGAGTTAATGTCAAGCATGCTAATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130560_MULTIEX1-5/11=4-11
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.838 C2=0.263
Domain overlap (PFAM):
C1:
NO
A:
PF0062726=UBA=PU(70.3=70.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAGCGCTGAACCCAGATG
R:
GCTGCAGCACCTCTAACAGTC
Band lengths:
292-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains