RnoEX0095629 @ rn6
Exon Skipping
Gene
ENSRNOG00000017983 | Ubac1
Description
UBA domain containing 1 [Source:RGD Symbol;Acc:1359542]
Coordinates
chr3:3462411-3463941:-
Coord C1 exon
chr3:3463839-3463941
Coord A exon
chr3:3463546-3463654
Coord C2 exon
chr3:3462411-3462645
Length
109 bp
Sequences
Splice sites
3' ss Seq
GGTCTGGTCTTTTTCCTCAGCTA
3' ss Score
6.36
5' ss Seq
CCAGTATGC
5' ss Score
2.6
Exon sequences
Seq C1 exon
TTCCAGACAGAACTCCGGAAGATCCTTGTGTCTCTCATTGAGGTGGCACAGAAGCTGTTAGCACTGAATCCTGATGCAGTTGAATTGTTTAAGAAGGCAAATG
Seq A exon
CTATGTTGGATGAAGACGAGGATGAGCGAGTGGATGAGACCGCCTTGCGGCAGCTCACAGAGATGGGCTTTCCTGAGAGCAGAGCCTCAAAGGCCCTTCGGCTGAACCA
Seq C2 exon
CATGTCGGTGCCTCAGGCCATGGAGTGGCTGATTGAACATTCGGAAGATCCAGCTATTGACACACCTCTCCCAGGCCATGCCGCCCAAGCGGAGGCGAGTGCTGCAGCTGCCACCTCCTCCTCCTCCTCTGAAGCTGCCGTGGGAACTAGTGTTGAAGATGAGGAGTCCCGGGATGAGCTCACAGAAATCTTCAAGAAGATACGCAGGAAAAAGGAATTCCGAGCCGATGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017983-'9-13,'9-12,10-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.703 C2=0.665
Domain overlap (PFAM):
C1:
NO
A:
PF0062726=UBA=PU(70.3=70.3)
C2:
PF0062726=UBA=PD(27.0=12.7),PF0062726=UBA=PU(8.1=3.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAGGTGGCACAGAAGCTG
R:
CATCCCGGGACTCCTCATCTT
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]