DreEX6013264 @ danRer10
Exon Skipping
Gene
ENSDARG00000059722 | ubac1
Description
UBA domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9372]
Coordinates
chr5:50584252-50590001:+
Coord C1 exon
chr5:50584252-50584348
Coord A exon
chr5:50585355-50585463
Coord C2 exon
chr5:50589749-50590001
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTATATCCCTTCTCTGGCAGCCA
3' ss Score
7.1
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ACAGAGCTGAGAAAGATTCTAGTTTCGCTTATCGAGGTCGCTCAGAAGCTGCTGGCTCTGAATCCTGATGCTGTAGAGCTTTTTAAAAAGGCCAATG
Seq A exon
CCATGTTAGATGAGGATGAGGAGGACCGCGTGGATGAAACGGCCCTGCAGCAGTTGACTGAGATGGGTTTCCCTGAGAGTCGTGCTGTGAAGGCTCTGCGCTTAAACCA
Seq C2 exon
CATGTCTGTGACCCAGGCTATGGAATGGCTGATTGAGCATGTTGATGACCCCATGGTTGATGCGCCTCTACCAGGACAGGAGAGTCCAGGGGCAGCCGCCGCTGCAGCGCCTGCTCCAGGAGCCTCTGCCACAGCTTTAGCAGCCCGTGCTCGTTTGATCTCCCAGGCCAGCATAGACGAGGCCAAACAGGATGAACTGACAGAGATCTTTAAAAGGATCAGAAGAAAAAGAGAGTTCAGACCAGACTCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059722-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=0.554 C2=0.259
Domain overlap (PFAM):
C1:
NO
A:
PF0062726=UBA=PU(70.3=70.3)
C2:
PF0062726=UBA=PD(27.0=11.8),PF065696=DUF1128=PU(81.4=41.2),PF0062726=UBA=PU(8.1=3.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCGAGGTCGCTCAGAAGCT
R:
TATGCTGGCCTGGGAGATCAA
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]