BtaEX0038757 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039851 | UBAC1
Description
Bos taurus UBA domain containing 1 (UBAC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076281]
Coordinates
chr11:103524069-103529949:-
Coord C1 exon
chr11:103529876-103529949
Coord A exon
chr11:103525038-103525146
Coord C2 exon
chr11:103524069-103524282
Length
109 bp
Sequences
Splice sites
3' ss Seq
GTGCCGTGTCTGGCCCGCAGCCA
3' ss Score
8.43
5' ss Seq
CCAGTACGT
5' ss Score
7.19
Exon sequences
Seq C1 exon
ATGTGATACTGTTGATCCGAAAGCGCGCTCCAGCCCCCCTCCCAAAGATGGCCGAAGTCTCCGCAGAAGAACAG
Seq A exon
CCATGCTGGACGAAGATGAGGACGAGCGCATGGACGAGGCAGCCCTGCGGCAGCTCACGGAGATGGGCTTCCCGGAGACCAGGGCGGCTAAGGCCCTGCGGCTGAACCA
Seq C2 exon
CATGTCGGTGCCCCAGGCCATGGAGTGGCTCATCGAGCACGCAGATGACCCCACCATCGACACTCCACTCCCAGGCCCATCCTCGCAGGGAGAGGCAGGCGCCGAGGCCGCCCCTGCTGCCGGGACCAGTGAGGAGGAGGAGGAGGCCAGAGATGAGCTGACGGAGATCTTCAAGAAGATCCGGAGGAAAAGGGAGTTTCGTGCGGATGCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039851_MULTIEX1-3/6=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.440 A=0.730 C2=0.681
Domain overlap (PFAM):
C1:
NO
A:
PF0062726=UBA=PU(70.3=70.3)
C2:
PF0062726=UBA=PD(27.0=13.9),PF0062726=UBA=PU(8.1=4.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCAAAGATGGCCGAAGTC
R:
TCCGCACGAAACTCCCTTTTC
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development