MmuEX6100976 @ mm9
Exon Skipping
Gene
ENSMUSG00000046618 | Olfml2a
Description
olfactomedin-like 2A [Source:MGI Symbol;Acc:MGI:2444741]
Coordinates
chr2:38806661-38813391:+
Coord C1 exon
chr2:38806661-38806934
Coord A exon
chr2:38810015-38810308
Coord C2 exon
chr2:38813206-38813391
Length
294 bp
Sequences
Splice sites
3' ss Seq
TGAGTGTTTTTTCTCCACAGACA
3' ss Score
11.03
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACACAGCTGGAGGGCAAGGCAGAGATCTCAACAAATATGGCAGCATACAGAAGAGCTTCTCAGACAAGGGCCTGGCAAAGCCTCCCAAGGAGAAGCTGCTGAAAGTGGAGAAGCTGAGGAAGGAGAGCATCAAGGGCAGAATACCCCAGCCCACAGCCAGGCCACGTGCGCTGGCTCAGCAGCAGGCAGTGATCCGAGGCTTCACCTACTACAAGGCAGGCAGACAGGAGGCCAGACAGGAGGCCAGACAGGAGGCACCCAAGGCTGCCGCTG
Seq A exon
ACAGCACCCTCAAAGGAACTTCCTGGCTGGAGAAGCTACCACCCAAGATAGAGGCCAAACTTCCGGAACCTAACTCTGCCAAACATGATGACGTCCGGCTGCAGGCTTCAGAAGGAGGCAACTTGACCCCTGACATTACCACCACCACCACCAGTACCAGCAGCAGCACCACCACCACTACTGGCACCACCAGCACCACCAGCACCACCAGCACCACCAGCACCACCACCCCAAGCCCTATCACCACTCCCTGGCCTACTGAGCCACCTTTGCATCCAGAAGTCCCCAGCCAAG
Seq C2 exon
GTCGGGAGGACAGCTGTGAGGGCACACTCAGAGCTGTGGATCCCCCTGTGAAACACCACAGTTATGGGCGCCATGAGGGGGCCTGGATGAAGGACCCTGCAGCTCTTGATGACAGGATCTATGTCACCAACTACTACTACGGAAACAGCCTGGTGGAGTTTCGAAACCTGGAAAATTTCAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046618-'5-5,'5-4,6-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.859 A=1.000 C2=0.349
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0219111=OLF=PU(21.2=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAAGGCAGAGATCTCAAC
R:
GATCCACAGCTCTGAGTGTGC
Band lengths:
304-598
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: