DreEX6083154 @ danRer10
Exon Skipping
Gene
ENSDARG00000104539 | OLFML2A (2 of 2)
Description
olfactomedin-like 2A [Source:HGNC Symbol;Acc:HGNC:27270]
Coordinates
chr21:8059389-8073033:-
Coord C1 exon
chr21:8072772-8073033
Coord A exon
chr21:8060515-8060781
Coord C2 exon
chr21:8059389-8059574
Length
267 bp
Sequences
Splice sites
3' ss Seq
TTCATCTGTTTTGCTGTCAGGTG
3' ss Score
9.56
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GACACATTAGGGACAAATATCAAAGATGCGTCAAAGTTTCCAGCAAAGAGTCCTGAAAAAGGGAAACCTCCTCCAAAGCAAGTGAAGGAAAAGCCAACCAAGCCTAAAAAAGAGACCACAAAACCAAACAAACCCAGTAAAACAGAGCAAACAGAGCAGCCCGGTAAAACCAAAACATCACAGAACCAGCCAGGACTCATCCGAGGAATCACATATTACAAATCCACTAAAACTGATGAGGCGGAAAACCACAACCAGAAAG
Seq A exon
GTGAAGAGAAGCCTGATGAAACAGACACCCTGCTTGAGGTAGAAATAGAAGAAAGTACCACACTTCCTGACGTCCTAGACACAGAGACAACCCCAGTAACCGTACCCACGACAACATTGACAACAACAACAACTCCTCCCACAACAACAACCACAACAACAACCCAGAGGACAACAACAACTAGCAGAACGATATACAGAGAGGAGCAACCGGCCCCAACCATCGCTCTAGTGCTGGACAACAGCAGCAACAACTCATATTTCACAG
Seq C2 exon
TGAAAGAGCACAGCTGTGATGGGACACTGGCTTCAGTGGATCTGCCAGTTAAGCAGCACAGTTACGGCAGGAACGAGGGTGCCTGGATGAAGGATCCAGCCGCCAAAGACTCCAAGATCTACGTCACCAACTATTACTATGGAAACAACCTTGTGGAGTTCCGGAACTTGGACAACTTCAAACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104539-'4-8,'4-7,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.867 C2=0.048
Domain overlap (PFAM):
C1:
PF093116=Rab5-bind=FE(43.1=100)
A:
PF093116=Rab5-bind=PD(11.9=26.7)
C2:
PF0219111=OLF=PU(21.3=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAAAAGCCAACCAAGCCT
R:
GATCTTGGAGTCTTTGGCGGC
Band lengths:
297-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]