BtaEX6046108 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004848 | OLFML2A
Description
olfactomedin-like 2A [Source:HGNC Symbol;Acc:HGNC:27270]
Coordinates
chr11:95800166-95804037:+
Coord C1 exon
chr11:95800166-95800412
Coord A exon
chr11:95802562-95802786
Coord C2 exon
chr11:95803852-95804037
Length
225 bp
Sequences
Splice sites
3' ss Seq
ACGGGGTCTTCTCTCCACAGACA
3' ss Score
10.75
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GACACAGCTGGAGGGAAAGGCAAAGAAAACAACAAATACGGCAGCGTGCAGAAGAGCTTTGTCGACAAGGGCCTCTCGAAACCTCCTAAGGAGAAGCTGCTGAAGGTGGAGAGGCTGAAGAAGGAGGGCAAAGGCAGATTCCCCCAGCCCACAGCCAAGCCCCGGGCCCTGGCCCAGCAGCAGGCCGTGATCCGAGGCATCACCTACTACAAGGCAGGCAGGAAAGACACGACCGAGCCCATGGCTG
Seq A exon
ACAACGCCCTCAAGGGCACTTCCTGGCTGGAGCAGCTGCCACCCAGGGTGGAGGGCCGGCCACCAGAGCCCAACTCGGCAGAGCATGAGGAGGCTGCGCCCCAGGCCCCTGAGGGAGCAGATTTGGCCCCTGGCACCCCTGCCTCGGATCCCACCCCCACCCCCACCCCCACCACCAGTCCCCTGCCCACCGAGCCACCCCCACGCCCGGAAGTCCCCAGTCAAG
Seq C2 exon
GCAGACAGGCGAGCTGTGAGGGCACCCTCCGGGCCGTGGACCCCCCTGTGAGACACCACAGCTATGGGCGCCATGAGGGAGCCTGGATGAAGGACCCCGCTGCCAGGGATGACAGGATCTATGTCACCAACTACTACTATGGAAACAGCCTGGTGGAATTCCGCAACCTGGAAAACTTCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004848-'7-5,'7-4,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.460
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0219111=OLF=PU(21.2=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGGCTGAAGAAGGAGG
R:
CGGAATTCCACCAGGCTGTTT
Band lengths:
304-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]