DreEX6051148 @ danRer10
Exon Skipping
Gene
ENSDARG00000005648 | olfml2a
Description
olfactomedin-like 2A [Source:ZFIN;Acc:ZDB-GENE-081105-107]
Coordinates
chr8:41321172-41332211:+
Coord C1 exon
chr8:41321172-41321439
Coord A exon
chr8:41330315-41330563
Coord C2 exon
chr8:41332026-41332211
Length
249 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTTCTCTGTTTTCAGAAA
3' ss Score
12.69
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
GGCACTGAGAGTAAAAAGTCCAAGGAGGCCATAAAACCACCCAACAAGAAACCCCCAGCTGTTAAACCTCCACCCAAACAGCCTAAAGAAAAACCTGTCAAGCCCAAGAAAGAGGCTCCCGCCAAAGCAGCAAAACCTGCGAAGCCAGACCCCACCACCAAAACCAAGACCTCAGTGCACCAAACGGGGGTCATCAGGGGGATCACATACTACAAAGCGTCTAAGAGCGAGGACTCAGAGTCACATTCAACGGGGAGAGCAGAAAGAG
Seq A exon
AAAACCAAGCCAAGACCCACACTGGCCACCAGGCTGAGGACAAAAAGGGCTCCGAGCTAGTTTTGGAAACCTCTGAAATATCGTCGACTGTGCTGCCAATAACAACCACCACTACGCTTGTGGCTGTCACAACAACAAGCACAACACTAGCAACCACCAGCGAAGTGCCCGTCATGAACTCAACACAGTCAACTCCAGGACCAGTGAAACCAATAGGCACTGGAGGAAAAACACACTTGCACAAAGCAG
Seq C2 exon
GTAAATCTCCAGACTGTGAGGGGACACTGGCTTCAGTAGAGATGCCAGAGAAGCATCACAGTTACGGGCGCAATGAAGGAGCCTGGATGAAAGACCCAATGGCCAAAGACAACAAGATCTATGTCACAAACTACTACTATGGCAATAACCTAGTAGAGTTTCGCAACCTGGAGAATTTCAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005648-'5-5,'5-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.964 C2=0.413
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0219111=OLF=PU(21.3=85.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAAGAAACCCCCAGCTGT
R:
GCCCGTAACTGTGATGCTTCT
Band lengths:
296-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]