RnoEX6016672 @ rn6
Exon Skipping
Gene
ENSRNOG00000014034 | Olfml2a
Description
olfactomedin-like 2A [Source:RGD Symbol;Acc:1311651]
Coordinates
chr3:23241880-23253112:+
Coord C1 exon
chr3:23241880-23242144
Coord A exon
chr3:23243344-23243598
Coord C2 exon
chr3:23252927-23253112
Length
255 bp
Sequences
Splice sites
3' ss Seq
GAGTTGTTTTCTCTCCACAGACA
3' ss Score
10.37
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GACACAGCTGGAGGGCAAGGTAAAGAGCTCAATAAATATGGCGGCATACAGAAGAGTTTCTCAGACAAGAGCCTCGCAAAGCCTCCCAAGGAGAAGCTGCTGAAGGTGGAGAAGCTGAAGAAGGAGACCATCAAGGGCAGAATACCCCCCCACCCCACCGCCAGGCCACGAGCTTTAGCTCAGCAGCAAGCCGTGATCCGAGGCTTCACCTACTACAAGGCGGGCAGACAGGAGGCCAGACAGGAAGCGCCCAAGGCTGCCGCTG
Seq A exon
ACAACACCCTCAAAGGTGCTTCCTGGCTGGAGAAGTTACCACCCAAGACAGAGGCCAAGCTTCCGGAGCCTAACTCTGCCAAACATGATGACATCAGGCTGCAGGCTTCAGAGGGAGCCAACTTGGCCCCTGATTTCTCCACCACCACCACCACCACCACTACAACCACCACTACCACCACCACCACCACCCCAACCCCTATCACCACTCCCTGGCCCACTGAGCCCCCTTTGCATCCAGAAGTCCCCAGCCAAG
Seq C2 exon
GTCGGGAGGACAGCTGTGAGGGCACGCTCCGAGCTGTGGATCCCCCTGTGAAGCATCACAGTTATGGGCGCCACGAGGGAGCCTGGATGAAGGACCCTGCAGCTCCAGATGACAGGATCTATGTCACCAACTACTACTACGGAAACAGCCTGGTGGAATTTCGAAACCTGGAAAATTTCAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014034-'5-8,'5-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=1.000 C2=0.413
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0219111=OLF=PU(21.2=85.7)
Main Skipping Isoform:
ENSRNOT00000018853fB10074
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGAGAAGCTGCTGAAGG
R:
ATCCTGTCATCTGGAGCTGCA
Band lengths:
298-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]