HsaEX0044717 @ hg19
Exon Skipping
Gene
ENSG00000185585 | OLFML2A
Description
olfactomedin-like 2A [Source:HGNC Symbol;Acc:27270]
Coordinates
chr9:127563693-127570245:+
Coord C1 exon
chr9:127563693-127563942
Coord A exon
chr9:127566373-127566621
Coord C2 exon
chr9:127570060-127570245
Length
249 bp
Sequences
Splice sites
3' ss Seq
CAGGGGTCTTCTCTCTGCAGACA
3' ss Score
9.13
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GACACAGCTAGAGGAAAAGGCAAGGACATCAGCAAGTATGGCAGTGTGCAGAAAAGCTTTGCAGACAGAGGCCTCCCAAAACCTCCCAAGGAGAAGCTGCTTCAGGTGGAGAAGCTGAGAAAGGAGAGCGGCAAGGGCAGTTTCCTCCAGCCCACAGCCAAGCCCCGCGCCCTGGCCCAGCAGCAGGCTGTGATCCGGGGCTTCACCTACTACAAGGCAGGCAAGCAGGAGGTGACCGAGGCGGTGGCAG
Seq A exon
ACAACACCCTCCAGGGCACTTCCTGGCTGGAGCAACTGCCGCCCAAGGTGGAGGGCAGGTCCAACTCCGCAGAGCCCAACTCCGCAGAGCAGGATGAGGCTGAGCCCAGGTCCTCCGAGCGAGTGGACCTGGCTTCTGGCACCCCCACTTCAATCCCTGCCACCACCACCACCGCCACCACCACCCCAACCCCCACCACCAGTCTCCTGCCCACCGAGCCACCTTCAGGTCCAGAAGTCTCCAGCCAAG
Seq C2 exon
GCAGAGAGGCGAGCTGTGAGGGCACCCTCCGGGCTGTGGACCCCCCTGTGAGGCACCACAGCTATGGGCGCCACGAGGGAGCCTGGATGAAGGACCCTGCAGCTCGAGACGACAGGATCTATGTCACCAACTACTACTATGGAAACAGCCTGGTGGAGTTCCGCAACCTGGAAAACTTCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185585_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.760 A=0.989 C2=0.437
Domain overlap (PFAM):
C1:
PF118553=DUF3375=PD(10.3=11.9)
A:
NO
C2:
PF0219111=OLF=PU(21.2=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGAAAGGAGAGCGGCAAG
R:
GAACTCCACCAGGCTGTTTCC
Band lengths:
297-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)