MmuEX0019930 @ mm9
Exon Skipping
Gene
ENSMUSG00000070880 | Gad1
Description
glutamic acid decarboxylase 1 [Source:MGI Symbol;Acc:MGI:95632]
Coordinates
chr2:70417168-70424003:+
Coord C1 exon
chr2:70417168-70417258
Coord A exon
chr2:70422477-70422556
Coord C2 exon
chr2:70423891-70424003
Length
80 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTCTTCCTTTATCAGGCC
3' ss Score
10.76
5' ss Seq
GAGGTGATG
5' ss Score
4.44
Exon sequences
Seq C1 exon
GTCACCCTCGATTTTTCAACCAGCTCTCTACTGGTTTGGATATCATTGGTTTAGCTGGTGAATGGCTGACATCGACTGCCAATACCAATAT
Seq A exon
GCCATCAGACATGAGGGAGTGTTGGTTGCTACGGTGATGGGGCTCAGAGCAGAACCAAAGCATGAGTGTGACCTCCAGAG
Seq C2 exon
GTTCACATATGAAATTGCACCCGTGTTTGTTCTCATGGAACAGATTACTCTTAAGAAGATGAGAGAGATCGTTGGATGGTCAAATAAAGATGGTGATGGGATATTTTCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070880_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(28.0=100)
A:
PF0028214=Pyridoxal_deC=PD(7.9=46.2)
C2:
PF0028214=Pyridoxal_deC=PD(34.6=94.9)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCGATTTTTCAACCAGCT
R:
TGACCATCCAACGATCTCTCTCA
Band lengths:
170-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types